cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data

scripts for microbiome analysis

Explore and filter structural variant calls from Lumpy and Delly VCF files

A tool to extract ATGC/Indel read counts at user specific loci from BAM files

Pipeline for variant imputation in low depth sequencing data using GLIMPSE

R-package to analyse and quantify aberrations in DNA-sequencing data

Nextflow script for processing WGS data

My lab book for current project: Identifying structural variation in WGS data

Script and data for Hill, Leitch & Gaya (2021) doi: 10.1016/j.fbr.2021.03.003