41 results for “topic:wgbs”
Analysis pipelines for genomic sequencing data
Multi-omics analysis protocols by Lyu.
A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methylated regions (DMRs) from CpG count matrices (Bismark cytosine reports)
A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.
ENCODE whole-genome bisulfite sequencing (WGBS) pipeline
A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to a CpG count matrix (Bismark cytosine reports)
Differential methylation: Easy, Fast, Identification and ANnoTation
AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project
TFregulomeR reveals transcription factors’ context-specific features and functions
Methylation analysis pipeline for genome graph
Cluster-based analysis of CpG methylation
R package to impute methylation within WGBS using machine learning
An R package for weighted region comethylation network analysis
A pipeline to identify differentially-methylated regions from whole-genome bisulfite sequencing data
Pipeline for BS-Seq data based on snakemake
The DKFZ alignment workflow plugin originally developed at the eilslabs
Analysis scripts for identification and visualization of Wilson disease-associated DNA methylation changes in human liver and blood
The transferase system for retrieving methylome data from methbase
Our typical analysis steps for WGBS data, starting from FASTQ reads and ending with the construction of bsseq objects. Created using nextflow
Genomic Annotation Visualization R package.
Whole Genome Bisulfite Sequencing Alignment pipeline
TFregulomeR reveals transcription factors’ context-specific features and functions
This repository contains data and functions related to computational epigenomics data analysis.
An example script of how to download WGBS data from SLIMS, check md5sums, merge lanes, and submit a project to CpG_Me
PopGeneticsVis: a toolkit for whole-genome resequencing and bisulfite sequencing downstream visualization in population genetics.
A flexible and sensitive method for capturing and integrating multimodal epigenetic information from cell-free DNA (cfDNA) using a single experimental assay.
A Bioconductor ExperimentHub data package for flow sorted purified whole blood cell types measured using DNA methylation on WGBS platform from BLUEPRINT
Analyses for the manuscript "Prenatal PCB exposure alters a shared neurodevelopmental DNA methylation profile in mouse placenta and fetal brain".
An integrated deconvolution approach to cfDNA methylation data.
Methurator is a Python package designed to estimate CpGs saturation for DNA methylation sequencing data.