Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you need is a reference genome and some short reads

Scripts for discovery and genotyping polymorphic Alu element insertions in human genomes

An R/C++ package for simulating the evolution of retrotransposons over time.

TE Atlas: A modular, multi-tool and machine learning–driven pipeline for robust transposable element discovery and classification in genomic data.

A NetLogo agent based model of transposable element behaviour within the genome.