Docker container for bioinformatics tools and pipelines

Collection of gene expression datasets

This project is an automated pipeline to generate annotated gene expression atlases for kingdoms of life

Single-cell and bulk RNA-seq analysis of T cell functional states associated with immunotherapy response in NSCLC.

Interstitial lung disease biomarker discovery using DIABLO. Integrates DNA methylation, transcriptome, and proteome. 30k features from 23 cases and 83 controls. Supervised learning model maximizing cross block covariance, adj R^2=0.73, 13 candidate biomarkers, with code and plots.

Fast, interactive desktop app for exploring 3D spatial transcriptomics results from pciSeq