📚 Tools and databases for analyzing HLA and VDJ genes.

Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data

A user friendly RabbitMQ library written in Golang.

immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.

Curated list of awesome Token Curated Registry (TCR) resources.

Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info

Large language modeling applied to T-cell receptor (TCR) sequences.

FrameDiPT: an SE(3) diffusion model for protein structure inpainting

TEIM: TCR-Epitope Interaction Modeling

A Parity Substrate runtime implementation of a simple Token Curated Registry (TCR)

Information and instructions for trying TCR workflow (test && commit || revert)

[DEPRECATED, see https://immunarch.com/] tcR: an R package for immune receptor repertoire advanced data analysis.

Accurate Typing of Diverse Immune-Related Gene Families from Long-Read Sequencing Data. It can handle HLA, KIR, IG, TCR, CYP gene families. It supports both WGS and amplicon data. It supports PacBio and Nanopore data.

Line Bot TCR

Code for "Attentive Variational Information Bottleneck for TCR-peptide Interaction Prediction", Grazioli et al., Bioinformatics 2022

An ultra-sensitive and precise tool for characterizing T cell CDR3 sequences in TCR-seq and RNA-seq data.

Highly informative TCR representation model

A react.js frontend for Substrate TCR runtime.

code repository for Lagattuta et al. "Repertoire analyses reveal T cell receptor sequence features that influence T cell fate." Nat. Imm. (2022)

Get going with 'test && commit || revert' in seconds

A database of T-cell receptor sequences

BASIC: BCR and TCR assembly from single cell RNA-seq

This is backend for CYRentBot

Python package to embed BCR and TCR sequences

Standardise TR/MH/IG data

Experiments for "On TCR Binding Predictors Failing to Generalize to Unseen Peptides", Grazioli et al., Frontiers in Immunology 2022

Decentralized uber-like system on ethereum

Fast trie-based search for TCR sequences with Levenshtein and substitution matrix support

ESMDesign uses ESM-IF1 for the design of fragments within multichain proteins

LIN3-TCR / CHIVAS