Tandem repeat expansion detection or genotyping from long-read alignments

ULTRA Locates Tandemly Repetitive Areas

TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain

Toolkit for VNTR genotyping and repeat-pan genome graph construction

TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain

TR annotation tool VAMPIRE

nPoRe: n-Polymer Realigner for improved pileup-based variant calling

tandemtwister: Tandem repeat genotyping tool

A python library for decomposing and visualizing tandem repeat sequences

RPTRF: A Rapid Perfect Tandem Repeat Finder Tool for DNA Sequences

Universal STR Allele Toolkit (USAT) for viewing and comparison

WebSTR-API: programmatic access to WebSTR, database of Human genome-wide variation in Short Tandem Repeats (STRs)

Tandem Repeat Visualization Tool that serves as the companion tool to TandemTwister.

C++ Tandem Repeats Detector -- Spring 2020 Independent Study Class in the Computer Science Department of Brooklyn College

A C++ tandem repeat finding library

Targeted characterisation of short structural variation.

Long Read Human first SNP, SV, Phasing and more, powered by Snakemake

Computational, High-throughput Individual Identification through Microsatellite Profiling

Computing All Distinct Squares

No description provided.

Typing of Clostridioides difficile isolates using NGS data (reads and contigs) based on tandem repeat loci (TR6, TR10), and toxin genes (cdtA, cdtB, tcdA, tcdB, tcdC).

🧬 A curated list of awesome resources for repeat DNA research

This program can detect repeated sequences in DNA.

TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain

Looper is an ultrafast DNA tandem repeat identification tool which works on basic arithmetic rules.

Supporting code for the microsatellite genotyping paper introducing CHIIMP

Discover VNTR-associated DELs that are hard to find using Illumina reads

TRAL pipeline for tandem repeat detection in proteins. Specifically in such which are related to colorectal cancer.

ECHO: a pipeline to analyse the human repeatome using Oxford Nanopore Technologies (ONT) long-read sequencing data, written in Snakemake

This program can detect the already-known sequence in DNA.