Structural variation caller using third generation sequencing

Structural variant and indel caller for mapped sequencing data

Toolset for SV simulation, comparison and filtering

NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations

Structural variation and indel detection by local assembly

Application of pan-genome for population

novoBreak: local assembly for breakpoint detection in cancer genomes

Micro DNA identification

Pangenome-based structural variation caller

A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)

MAMnet uses a deep learning network to call genetic variants from third generation DNA sequencing data.

Pipeline for SV detection using 10X genomics data

A snakemake pipeline to call structure variants from ONT data

PhD thesis