Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement

Desktop utility that helps preventing repetitive strain injuries by keeping track of usage patterns and periodically informing the user to take breaks.

Python 2D Digital Image Correlation (DIC) Software

A python library for correlating EBSD and HRDIC data

Metabolic Engineering Workbench

Implementation of geometric phase analysis (GPA) in C++

⚡🧠A finite element Python implementation

Generates an Abaqus simulation batch describing a cracked half-plane, and outputs the J-integral

An RNA virus strain-level identification tool for short reads.

A Schrödinger-Poisson solver for 2D materials with 1D interfaces (wires)

GAN/convolutional and Transformer models to predict missing mechanical information given limited known data in part of the domain, and further characterize the composite geometries from the recovered mechanical fields for 2D and 3D complex microstructures

Detect complete horizontal gene transfer (HGT) event rapidly and accurately from complex metagenomics data.

Computes the electronic band structure of bulk ZB semiconductor with k.p models WITH STRAIN

Connected Hangboard for climbers

Planetary crustal and mantle properties, and lithospheric displacements, stress and strain, calculations in spherical harmonics.

A finite element code to solve for the dynamic fragmentation of concrete at different strain rates. A bi-linear cohesive zone model is used for the simulation

Bash scripts to plot coulomb results on gmt

Module of the SailTrack system for measuring the forces acting on the boat maneuvers.

A simple PCB to use HX711 module in strain gauge applications.

Pstrain profiles strains in metagenomics data. It infers strain abundance and genotype for each species. Also, it has a single species mode; where given a BAM and VCF, it can phase the variants for any species.

FEM 1D example with Python

Deforming crystal (lagrangian strain) for VASP

PsyBot is a harm reduction and drug education orientated discord bot

Abaqus CAE plugin to calculate Solidworks equivalent strain for each frame from the currently displayed odb

Theoretical spectral response of a water well to harmonic strains

Matlab code for post processing of split-Hopkinson/Kolsky bar experiments

A pipeline for our research workflow.

This repository is a pythonic solution to the 'GPS and infinitesimal strain analysis' method, published by Phil Resor and Vince Cronin. The non-pythonic method may be found on the SERC website under the GETSI teaching materials.

Strain relaxation from a TEM foil using FEM

Abaqus script to compute Green strain from Nominal strain