Multi-subject Single Cell Deconvolution

Scalable genetics toolkit

Python command line tool for Multi-Trait Analysis of GWAS (MTAG)

Integrating GWAS and spatial transcriptomics for spatially resolved mapping of cells associated with human complex traits.

PolyFun (POLYgenic FUNctionally-informed fine-mapping)

An R package for performing STAAR procedure in whole-genome sequencing studies

Find causal cell-types underlying complex trait genetics

An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline

Genotype Representation Graph Library

R package to perform Bayesian Genome-Wide Association Studies

Resources (software, data, research article) in the field of statistical genetics

A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics

The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVORannotator, STAARpipeline and STAARpipelineSummary

An R package for performing MetaSTAAR procedure in whole-genome sequencing studies

Estimate genetic correlation using predicted expression

GEAR [GEnetic Analysis Repository], contact chenguobo@gmail.com;

metaUSAT is a data-adaptive statistical approach for testing genetic associations of multiple traits from single/multiple studies using univariate GWAS summary statistics.

Heritability, genetic correlation and functional enrichment estimation for case-control studies

An R package for summarizing and visualizing association analysis results of whole-genome/whole-exome sequencing (WGS/WES) studies generated by STAARpipeline

An R package for performing MultiSTAAR procedure in whole-genome sequencing studies

Multi Kernel Linear Mixed Models for Complex Phenotype Prediction

A Python/R package for fitting linear mixed models for genome-wide association studies among related individuals

STAAR Pipeline for Analyzing Whole-Genome/Whole-Exome Sequencing Data in PheWAS (PheWAS Version of STAARpipeline)

Efficient algebraic functions for statistical analysis of genomic data

Association testing for genetically regulated co-expression.

Simulate phenotypic effects on a GRG

Julia implementation of Factored Spectrally Transformed Linear Mixed Models

An app for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline in UK Biobank RAP

Tools for regression using pre-computed summary statistics

GAUDI: a penalized regression based PRS method designed specifically for admixed individuals