"topic:squidpy" — Search

5 results for “topic:squidpy”

scverse/squidpy

Spatial Single Cell Analysis in Python

Python552108Updated 2 hours ago

data-visualizationimage-analysissingle-cell-genomicssingle-cell-rna-seqspatial-analysisspatial-transcriptomicssquidpy

theislab/ncem

Learning cell communication from spatial graphs of cells

Python11313Updated 3 weeks ago

cell-cell-communicationcell-cell-interactioncvaeencoder-decoder-modelglmgnnscanpysquidpytensorflow

cafferychen777/ChatSpatial

🧬 Analyze spatial transcriptomics data through natural language conversation. Stop writing code, start having conversations with your data. MCP server for Claude Code and Codex.

Python194Updated 2 days ago

agentic-aibioinformaticscell-communicationclaude-desktopcomputational-biologydeconvolutiongenomicsllm-agentmachine-learningmcp-servermodel-context-protocolpythonpytorchscanpysingle-cellspatial-analysisspatial-domainsspatial-transcriptomicssquidpyvisualization

shipatel302/spatial-transcriptomics-visium

No description provided.

Python00Updated 6 days ago

10x-genomicscancer-genomicscell-type-deconvolutionpythonrscanpyspatial-transcriptomicssquidpytumor-environmentvisium

Varun-U-Gowda/Spatial_Transcriptomics_Visium

Spatial transcriptomics pipeline for 10x Visium breast cancer data with spatial validation

Python00Updated 2 months ago

cancerscanpyspatial-transcriptomicssquidpyvisium