Official git repository for Biopython (originally converted from CVS)

A versatile pairwise aligner for genomic and spliced nucleotide sequences

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

Accelerated BLAST compatible local sequence aligner.

The next version of bwa-mem

Versatile open-source tool for microbiome analysis

:book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data.

Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.

Sequence-to-graph mapper and graph generator

The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

Align proteins to genomes with splicing and frameshift

Bidirectionally transformed strings

Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)

LexicMap: efficient sequence alignment against millions of prokaryotic genomes

MSA(Multiple Sequence Alignment) visualization python package for sequence analysis

A fast multiple sequence alignment program.

Global alignment and alignment extension

Neural Networks for Protein Sequence Alignment

Comparative Genomics Toolkit 3

Rust bindings to minimap2 library

Genome wide orthology inference and dNdS estimation

A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment

Efficient implementations of Needleman-Wunsch and other sequence alignment algorithms written in Rust with Python bindings via PyO3.

Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; available as a docker image

BISulfite-seq CUI Toolkit

Arioc: GPU-accelerated DNA short-read alignment

Sequence alignment tools

SneakySnake:snake: is the first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU architectures. It greatly (by more than two orders of magnitude) expedites sequence alignment calculation for both short and long reads. Described in the Bioinformatics (2020) by Alser et al. https://arxiv.org/abs/1910.09020.

No description provided.

Collection of commonly used RDP Tools for easy building