29 results for “topic:sed-ml”
A platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results
Registry of containerized biosimulation tools that support a standard command-line interface
Ontology of algorithms for analyzing biological models, their parameters, and their outputs
Tool for validating that biosimulation software tools implement the BioSimulators standards for simulators
An efficient Java™ solver implementation for SBML
Utilities for building standardized command-line interfaces for biosimulation software packages
Template for a repository for building a BioSimulators-compliant command-line interface and Dockerfile for a biosimulation program
AMICI biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
tellurium biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
GillesPy2 biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
COBRApy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
PySCeS biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Python library to download and cache models from BioModels
COPASI biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Tutorials for BioSimulators
Multimodal Evaluation for Sound Event Detection (SED)
Command-line program and scheduled GitHub action for publishing the BiGG model repository to BioSimulations
MASSpy mathematical simulation program via BioSimulators-compliant command-line interface and Docker container
pyNeuroML simulation program via BioSimulators-compliant command-line interface and Docker container
RBApy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
BoolNet biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Command-line application for publishing the Physiome model repository of physiological models to the BioSimulations repository for simulation projects
CBMPy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
XPP mathematical simulation program via BioSimulators-compliant command-line interface and Docker container
Summary of the technical documentation for BioSimulators
SED-ML website
Command-line program and scheduled GitHub action for publishing the ModelDB model repository to BioSimulations
OpenCOR simulation program via BioSimulators-compliant command-line interface and Docker container
GINsim biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container