The Journal of Open Source Software

EasyBuild - building software with ease

A collection of easyconfig files that describe which software to build using which build options with EasyBuild.

EasyBuild is a software installation framework in Python that allows you to install software in a structured and robust way.

Tool that just makes your open source project better using LLM agents

A python package for processing eye movement data

python package for DFA (Detrended Fluctuation Analysis) and related algorithms

Collection of easyblocks that implement support for building and installing software with EasyBuild.

BRAPH 2.0 is a comprehensive software package for the analysis and visualization of brain connectivity data, offering flexible customization, rich visualization capabilities, and a platform for collaboration in neuroscience research.

The Database Infrastructure for Mass Spectrometry (DIMSpec) project

A modular shared-memory high-performance framework for multiscale cardiac multiphysics simulations.

Howto and implementation documentation

Python package for temporal evolution of initial conditions under the generalized Lugiato-Lefever equation

A program for real-time Reflection High Energy Electron Diffraction (RHEED) analysis.

Collection of my network covert channel tools.

FreeClimber is a background-subtracting particle detection platform designed to quantify group climbing performance in a Drosophila negative geotaxis (climbing) assay

An inversion-of-control framework for developing modular scientific software.

Extract linked metadata from repositories

This repository contains all community documentation for contributing to our open-source projects, including guidelines, workflows, and resources to help new and returning contributors collaborate effectively in support of open science and reproducible research.

Python implementation of time varying filter EMD

Contains the xSDK community policies. The master branch is the latest accepted version of the policies and will be applied to future xSDK releases. See the releases page for tags corresponding to the current and past xSDK releases.

Data structures and functions for simulation and analysis of the propagation dynamics of laser pulses in nonlinear waveguides

Promoting Exploration and Discovery of Research Software with Human-Curated Graphs

Analytic signal spectrograms with optimized time-frequency resolution

Web application for displaying the contents automatically retrieved from a code repository by applying the Software Metadata Extraction Framework (SOMEF)

PETLS: Persistent Topological Laplacian Software

Hybrid automated/manual colony counting for soft agar colony formation assays. Browser-based tool with live threshold tuning, manual annotation, and CSV export. Runs locally for data privacy.

AnnNet (Annotated Network) is a unified, high-expressivity graph platform designed to bring the convenience of AnnData-style annotated containers to networks, multilayer structures, and hypergraphs.

📄 Replication Package: How Scientists Develop Scientific Software

Hybrid quantum-classical encryption system using BB84 protocol, AES-256, HMAC, and optional post-quantum signatures. Includes full GUI and scientific metrics logging.