COBRApy is a package for constraint-based modeling of metabolic networks.

COnstraint Based Reconstruction and EXascale Analysis (in Julia)

LibSBMLSim: A library for simulating SBML models

A Python package for "classic" Constraint-Based Reconstruction and Analysis (COBRA) and the new COBRA with kinetics (COBRA-k). Link to documentation and tutorials:

sbmlsim: SBML simulation made easy

Spatial Model Simulator with SBML Model

LibSBMLSim: A library for simulating SBML models (Version 2)

Easily usable JavaFx-based inSilico module for dynamic Systems Biology Markup Language (SBML) model simulation visualization. Provides an intuitive Graphical User Interface for dynamic processing based on SBSCL.

Analysis of Dynamic Adaptations in Parameter Trajectories

Vue3 Project using Pyodide / basico and python-copasi emscripten