🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances

A Ruby toolset for interacting with the OStatus suite of protocols

Differential expression and allelic analysis, nonparametric statistics

PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using Salmon.

RNAseq pipeline centered on Salmon

Nextflow Alignment Pipeline - from fastq.gz to sorted bam/cram with ease

OStatus Specification

TUCCA's RNA-Seq Workflow for Read Quantification, Differential Expression, and Pathway Enrichment Analysis

RNA-seq Analysis Pipeline Testing and Optimization Resource - Intelligent pipeline selection and comprehensive benchmarking.

A salmon plugin for WordPress

CoExp website is a web-based tool developed in .NET Core Framework, for querying 109 independent gene co-expression networks from the family of CoExp R packages.

A JavaScript interpreter for Homespring

rCAX R package: an R client to access the REST API for the StreamNet Coordinated Assessments tables

Evaluating HISAT2, Salmon and Kallisto alignment using Checkpoint Blockade treated CT26 Experimental Data

Code for smooth interactions with the salvage database

Mise à jour et standardisation des séries chronologiques d'abondance du saumon atlantique sur les cours d'eau de l'ORE DiaPFC

Frontend code of salmonfit.com

연어봇 - SalmonBot

Performed a differential gene expression analysis with RNA-seq that compares the expression in human control breast cancer cell lines with lines treated by silencing the NRDE2 gene. A Salmon + tximport + DESeq2 workflow was conducted to pursue this.

Spawner and fraction wild data for the NWFSC Status Reviews.

Transform, query, and merge tabular files with the expressionable command-line tool. This tool is used primarily for gene-expression data.

An easy pipeline to analyze data with Salmon.

Secure all your personal files in Salmon Vault with AES-256 encryption for your Android, Windows, Linux, MacOS devices. Powered by Salmon AES CTR library.

Code and scripts for the RNA-seq analysis of project: SMG5-SMG7 authorize nonsense-mediated mRNA decay by enabling SMG6 endonucleolytic activity

Code and scripts for the RNA-seq analysis of project: Deciphering the cellular roles and dissecting functional regions of UPF3A and UPF3B in human NMD

Development site for an integrated population model for Auke Creek coho salmon

This is a code tutorial for rna or dna sequence mapping by myself-RyanYip

This is an R package that runs the standardized trends metrics used in the 5-year Viability Reports for listed PNW salmonids.

Perform differential analysis from FastQ files with Salmon, tximport, and DESeq2