26 results for “topic:rna-velocity”
Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses
CellRank: dynamics from multi-view single-cell data
A guide to using a Seurat object in conjunction with RNA Velocity
Predict RNA velocity through deep learning
Toolkit for Single-Cell Velocity
𝒫robabilistic modeling of RNA velocity ⬱
Dynamical systems methods for RNA velocity analysis
Spatial Transcriptomics Quantification pipeline for 10x Visium and H&E-stained whole slide images
Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments
Characterize gene dynamics over trajectories using GLMs, GEEs, & GLMMs.
Module 4 for HKU Single-cell Workshop
Simulation based inference of differentiation trajectories from RNA velocity fields.
Entrain: Predicting Environmental Regulators of Differentiation Trajectories
Tutorials for using BRIE
R pacakge for RNA velocity estimation with nonlinear models
Dockerized Velocyto for RNA Velocity
noSpliceVelo infers RNA velocity without separating unspliced and spliced transcripts
collab | DFC
This repository contains the codebase accompanying the paper Fundamental errors in RNA velocity arising from the omission of cell growth.
This repository contains coding scripts utilized for the analysis of Longitudinal scRNAseq of human pancreatic slices datasets
IGFBPL1 Retinal Microglia Project | Dong Feng Chen Lab collaboration | Schepens Eye Research Institute, Mass General Hospital, Harvard Medical School
RNA Velocity for SEQC
Retinal ganglion cells regeneration in 2 days post optic nerve crush retina | Lydia Tai | Dong Feng Chen Lab collaboration | Schepens Eye Research Institute, Mass General Hospital, Harvard Medical School
Socs3/Spp1 Project on Microglia in OIR | Ye Sun Lab Collaboration Project | Boston Children's Hospital
Growth Hormone effect on Cartilage Growth Plate; Light-Sheet Microscopy; Pseudocoloring | Projects I started and still working on in Andrei Chagin Lab | Karolinska Institutet
🧬 Analyze spatial gene expression in cancer tissues with this automated Python pipeline, uncovering insights into tumor microenvironments and biological regions.