Reference mapping for single-cell genomics

Reference-guided transcript discovery and quantification for long read RNA-Seq data

Analyze your RNA sequencing data without writing a single line of code

Visual self-service analytics platform for big omics data.

This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data

An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study

integrated RNA-seq Analysis Pipeline

Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail

Scalable RNA-seq analysis

Rails/Docker application for the Broad Institute's single cell RNA-seq data portal

pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data

Small non-coding RNA annotation Pipeline Optimized for rRNA- and tRNA-Derived Small RNAs

Tutorials, workflows, and convenience scripts for Single Cell Portal

GREIN : GEO RNA-seq Experiments Interactive Navigator

SNP-free RNA editing Identification Toolkit

The pmartR R package provides functionality for quality control, normalization, exploratory data analysis, and statistical analysis of mass spectrometry (MS) omics data, in particular proteomic (either at the peptide or the protein level), lipidomic, and metabolomic data.

Data-driven Network-based Bayesian Inference of Drivers

Clustering cells from single cell RNA seq assays

The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating from repeat sequences, recombinant B and T cell receptors, and microbial communities.

Interactive Differential Expression AnaLysis - DE made accessible and reproducible

Snakemake based pipeline for RNA-Seq analysis

Workflow management with Nextflow and nf-core

scripts for RNA-Seq analysis

scGEAToolbox: Matlab toolbox for single-cell gene expression analyses

Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor

A repository for the Playbook Workflow Builder project.

Automatic RNA-Seq Pipelines with Interactive Report

群体遗传学分析中用到的script和skill等

Fast in-silico normalization algorithm for NGS data

interactive Multi Objective K-mer Analysis