PyMOL extension to color AlphaFold structures by confidence (pLDDT).

A PyMOL Plugin for calculating docking box for LeDock, AutoDock and AutoDock Vina.

The repository pymolschortucts contains the a collection of shortcuts that are loaded on startup of PyMOL. These shortcuts enable websearches from within PyMOL as well as many other convienent functions that make work in PyMOL more productive..

PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.

A Consensus Docking Plugin for PyMOL

A PyMOL plugin for visualizing vibrations in molecules and solids

Generate Boltzmann-weighted Sterimol Steric Parameters for Conformationally-Flexible Substituents

calculate chemical bond strength in solids, surfaces and molecules

A collection of PyMOL plugins to visualize atomic bonds.

Restraintmaker is a tool intended to build Position or Distance restraints for Molecular Dynamics simulations (or any other simulation technique with coordinate-based particles). It can be used on a script layer or as an interactive plugin for PyMol. Features are different selection modes and Optimizers to distribute restraints.

parKVFinder: thread-level parallel KVFinder

Docking viewer plug-in for PyMOL

parKVFinder-win: thread-level parallel KVFinder for Windows

A simple script to generate Ramachandran plot from Pymol.

MODE-TASK plugin for PyMOL

Customized batch exhibition of three-dimensional molecules based on pymol framework

PyMOL extension to map a protein pocket, generated from PockDrug, to the full protein structure.

Pyshifts: A Pymol Plugin for Chemical Shift-Based Analysis of Biomolecular Ensembles

PDB plugin for PyMOL

PyMOL plugin to visualize interactions detected by the fingeRNAt program

An AI Assistant for the PyMOL molecular visualization software

This is a plugin for PyMol 2.x to use the vina/Autodock fork SMINA under Windows 10 or 11 with the wsl2 linux subsystem installed.

This is a plugin for PyMol 2.x to calculate and show the dipole moment vector of a proteine structure in pdb format.

Pymol Extension for the Visualization of the RNA pseudoknots.

noodle-strut is an interactive 3D printing structural support module for PyMOL

Assess the secondary structure in Pymol

A tool for insight into protein-nucleic acids interaction information

PyMOL script to calculate backbone RMSD of two polypeptides of same origin

Demo/experimental port of APBS plugin to PyQt for PyMOL 2.x.

A powerful PyMOL plugin for efficient high-throughput batch mutation, mutagenesis, and in-silico protein engineering via an intuitive GUI.