Small non-coding RNA annotation Pipeline Optimized for rRNA- and tRNA-Derived Small RNAs

piRNA cluster prediction and analysis framework

get smallRNAseq summary in piclusters, transposons and genes from bed2 files generated by piPipes or other softwares

miRPipe: Open source RNA-Seq bioinformatics analysis docker for identification of miRNAs and piRNAs

piRNA IPdb

miRSim Synthetic Sequence Simulator

Characterization of small RNA pathways

A pipeline for quick and dirty QC of your small RNA-seq libraries focused on piRNA.

A little script that looks for piRNA clusters based on small RNA library coverage

Brief Intro about myself and the repositories with my analysis pipelines

The scripting part of my Dissertation with the data analysis of all the datasets I used

Fully automated analysis pipeline for planarian piRNAs