Modeling Dense Multimodal Interactions Between Biological Pathways and Histology for Survival Prediction - CVPR 2024

R client for the OmniPath web service

pathpy is an OpenSource python package for the modeling and analysis of pathways and temporal networks using higher-order and multi-order graphical models

MSigDB gene sets for multiple organisms in a tidy data format

PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways

Caleydo - Visualization for Molecular Biology

A web application to visualize and edit pathway models

A project for exploring differentially active signaling paths related to proteomics datasets

Graph-based modeling environment for biology, including prototype editor and services

The ideal tool for exploring global marine biogeochemical cycles.

A web based visualization tool for process description maps in SBGN

Pathfinder is a tool for the visual exploration of paths in large graphs.

Harmonizing pathway databases using Biological Expression Language (BEL)

GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF

R package for WikiPathways API

PHOsphoproteomic dissecTiOn using Networks

A web application to visualize and edit the pathway models represented by SBGN Process Description Notation

Package to calculate functional similarity between genes https://biocor.llrs.dev

A web application for exploring, analyzing, and curating pathway databases

A Bio2BEL package for integrating pathway-related information from KEGG in BEL

Code for converting between BioPAX pathways and Gene Ontology Causal Activity Models (GO-CAM)

SyBLaRS: Systems Biology Layout & Rendering Service

Proof Of Concept - Open Patient Pathway Generator using and an agent based approach

This is the data repository for the models created and edited with the Noctua tool stack for GO.

Pipeline to implement a "TAD_Pathways" analysis. Discover candidate genes based on association signals in TADs

This is the complete module you will need to get started with 100 days of Data Science by 100 days Official.

Awell's Developer Hub website.

This repository contains the different resources derived or generated using ComPath

GRAPH Interaction from pathway Topological Environment

Pathway Signatures for Drug Repositioning and Discovery