Here you will find all the code needed to run the PaleoProPhyler!

Transformer-based de novo sequencing (Casanovo) + database searching with rescoring (Sage + Mokapot). For metaproteomics datasets

A random forest classification model for degraded BLG deamidation. A multi-level system for deamidation hotspots, asparagine vs glutamine clustering and protein level authentication using trypsin as the baseline

🔒 Build a secure multi-tenant JWT authentication service with Symfony 7.3 and PHP 8.2+, offering features like token rotation and OAuth 2.0 support.