Registry of containerized biosimulation tools that support a standard command-line interface

Utilities for building standardized command-line interfaces for biosimulation software packages

AMICI biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

Tutorials for BioSimulators

PySCeS biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

Python library to download and cache models from BioModels

Command-line program and scheduled GitHub action for publishing the BiGG model repository to BioSimulations

MASSpy mathematical simulation program via BioSimulators-compliant command-line interface and Docker container

pyNeuroML simulation program via BioSimulators-compliant command-line interface and Docker container

GINsim biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

RBApy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

BoolNet biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

Command-line application for publishing the Physiome model repository of physiological models to the BioSimulations repository for simulation projects

Summary of the technical documentation for BioSimulators

CBMPy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

XPP mathematical simulation program via BioSimulators-compliant command-line interface and Docker container

Command-line program and scheduled GitHub action for publishing the ModelDB model repository to BioSimulations

Clojure utilities for the interaction with COMBINE archives (.omex files).

OpenCOR simulation program via BioSimulators-compliant command-line interface and Docker container