42 results for “topic:nextstrain”
Nextstrain build for SARS-CoV-2
Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
Scripts. config, and snakefiles for seasonal-flu nextstrain builds
Nextstrain build for mpox virus
A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV rebuilds.
Nextstrain build for avian influenza viruses
Renders SVG schema of SARS-CoV-2 clade as defined by Nextstrain
Nextstrain build for dengue virus
Workflow for RSV analyses on Nextstrain.org
Nextflow pipeline for generation of phylogenetic trees to be visualized in Auspice.
Nextstrain build for Zika virus
SARS-CoV-2 variant growth rates and frequency forecasts
Parallelization of Nextstrain builds and parameter testing using Nextflow
No description provided.
the repository used to build West Nile Virus for nextstrain
Nextstrain build for tuberculosis
Nextstrain build for Ebola virus
BA.2.86 project with Sigal lab
Nextstrain build for measles virus
Nextstrain build for mumps virus
Collective list of active repositories providing tracking as well as datasets to defeat and restrict the widespread of Novel CoronaVirus
Spike-only SARS-CoV-2 Nextstrain build
Nextflow pipeline for generation of BCCDC routine SARS-CoV-2 phylogenetic trees to be visualized with Auspice.
Nextstrain build for Lassa virus
No description provided.
No description provided.
Nextstrain build for rubella virus
No description provided.
Chikungunya virus workflows