907 results for “topic:nextflow”
A DSL for data-driven computational pipelines
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
A curated list of nextflow based pipelines
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
A flexible pipeline for complete analysis of bacterial genomes
Repository to host tool-specific module files for the Nextflow DSL2 community!
A curated collection of Nextflow implementation patterns
Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-droplet detection
Python package with helper tools for the nf-core community.
GCP for Bioinformatics Researchers
Assembly and binning of metagenomes
FlowCraft: a component-based pipeline composer for omics analysis using Nextflow. :whale::package:
Lint, format and auto-fix your Groovy / Jenkinsfile / Gradle files using command line
Amplicon sequencing analysis workflow using DADA2 and QIIME2
ChIP-seq peak-calling, QC and differential analysis pipeline.
Nextflow training material
ATAC-seq peak-calling and QC analysis pipeline
Nanopore demultiplexing, QC and alignment pipeline
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark/bwa-meth + MethylDackel or bwa-mem + rastair
Pipeline to fetch metadata and raw FastQ files from public databases
AWS for Bioinformatics Researchers
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Simple test framework for Nextflow pipelines
RNA-seq analysis pipeline for detection of gene-fusions
Assembly and intrahost/low-frequency variant calling for viral samples
The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation
Nextflow Tower system
Test data to be used for automated testing with the nf-core pipelines
VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies