Learnable latent embeddings for joint behavioral and neural analysis - Official implementation of CEBRA

A publicly-editable collection of open computational neuroscience resources

Easy whole-brain modeling for computational neuroscientists 🧠💻👩🏿‍🔬

a visualization method for neural data

Interactive Brain Playground - Browser based tutorials on EEG with webbluetooth and muse

An introduction to the practicing neuroscientist to data analysis in Python

Just Another Tool for Online Studies

Robust video-based eye tracking using recursive estimation of pupil characteristics

Closed-loop behavioral experiment toolkit using pose estimation of body parts.

Toolbox for analyzing behavioral videos and neural activity

A table containing imaging analysis tools for biology, with a focus on calcium imaging.

NeuroAI-UW seminar, a regular weekly seminar for the UW community, organized by NeuroAI Shlizerman Lab.

Tools and functions for neural data processing and analysis in python

Curation of BIDS (CuBIDS): A sanity-preserving software package for processing BIDS datasets.

Robust electrophysiology tools with GPU acceleration

SpikeShip: A method for fast, unsupervised discovery of high-dimensional neural spiking patterns.

A deep learning framework for synaptic event detection

Automated and reproducible analysis of multiphoton imaging datasets

Gaussian-Processes Surrogate Optimisation in python

Setting up C elegans as an RL environment.

Library for processing and analyizing M/EEG data as recorded with naturalistic stimuli.

Example pipeline for preprocessing, reading in behavioural files, first level and second level analysis

Derotate images acquired via multiphoton calcium imaging

sync2brain's bossdevice RESEARCH Application Programmable Interface (API) for MATLAB

Data and tools from the publication "Evolution of Cortical Geometry and its Link to Function, Behaviour and Ecology" by Schwartz et al. for mapping values defined on cortical surfaces between species based on their phylogenetic relationship

HNCcorr algorithm for neuron identification in calcium imaging datasets.

Brain Analysis using Graph Theory

Continuous-Time Event-based Transfer Entropy

The Brain Predictability toolbox (BPt), is a python based Machine Learning library designed primarily for tabular and neuroimaging specific neuroimaging data but can easily be generalized further.

Swap facial landmarks(or whole facial area) for the part-whole task with OpenCV + dlib and MediaPipe.