An attempt to help anyone interested in using Perl for Bioinformatics

RNAcentral website source code

Rfam production pipeline

Rfam documentation and help hosted on ReadTheDocs

Rfam website source code

Learn how to annotate a genome with Rfam families using Infernal

A tool for tRNA-derived small RNA annotation

Backend for the Rfam family building pipeline

ncRNABert: Deciphering the landscape of non-coding RNA using language model

BiLSTM-Attention Transformer for non-coding RNA Coding Potential Prediction（Code）Journal of Chemical Information and Modeling 2024-08-09 | Journal article DOI: 10.1021/acs.jcim.4c01097

ncRNA identification, annotation and functional prediction

Codes for the paper entitled: Non-Coding RNAs Improve the Predictive Power of Network Medicine

Source code for "Overexpression of CRNDE in glioblastoma is a poor survival prognosis biomarker" paper

Reproducible WGCNA pipeline for PCOS microarray dataset GSE48301

Code for importing ZWD into RNAcentral

Inferring ncRNA synergistic competition

ML based tool for discovering of coding and non coding small RNAs in human RNA-seq data

MD thesis' project, where I performed an In silico target prediction for small ncRNAs in Mycobacterium tuberculosis

Cell-surface glycoRNA-based cancer detection.

nf-core pipeline for genome-level ncRNA annotation using Infernal

🧬 Analyze PCOS using WGCNA with R, uncovering novel long non-coding RNAs and their correlation with disease traits, based on public microarray data.