Proof-of-concept for reasoning over the SemMedDB knowledge base, using miniKanren + heuristics + indexing.

Schema and generated objects for biolink data model and upper ontology

KGX is a Python library for exchanging Knowledge Graphs

MyGene.info: A BioThings API for gene annotations

MyVariant.info: A BioThings API for human variant annotations

A database of paths that represent the mechanism of action from a drug to a disease in an indication.

Build system for the RTX-KG2pre biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)

BioThings API framework - Making high-performance API for biological annotation data

debugging biological networks to reach coherence, completeness and consistency

Integrated OBO ontology store

Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)

A collection of useful python functions for looking up information and working with the Biolink Model

Intelligent APIs for a more connected web: https://smart-api.info

MyChem.info: A BioThings API for chemical/drug annotations

Service that produces Translator compliant nodes given a curie

Extracting gene sets from published pathway figures

BioThings Explorer: a schema-based client for API interoperability

Babel creates cliques of equivalent identifiers across many biomedical vocabularies.

This repo hosts the API metadata for the Translator project

TRAPI service for BioThings Explorer

No description provided.

A Translator Query Language

API access for DepMap data

No description provided.

NCATS Translator Knowledge Beacon Application Programming Interface plus Sample code

Reasoner

Web Interface for BioThings Explorer

Autonomous relay system for NCATS Biomedical Data Translator

No description provided.

Pydantic models for the Reasoner API data formats