A code to generate atomic structure with symmetry

Free and open-source code package designed to perform PyMEEP FDTD simulations applied to Plasmonics (UBA+CONICET) [Buenos Aires, Argentina]

The Otago Research Genetic Algorithm for Nanoclusters, Including Structural Methods and Similarity (Organisms) program is a genetic algorithm designed to globally optimise nanoclusters (also known as clusters or nanoparticles)

A Matlab code for tracking colloidal fluorescent nanoparticles.

Python Code for Processing LAMMPS Data generated for two data types: LAMMPS trajectory file and LAMMPS dump files. Subsequently, the code involves post-processing of the data to give interfacial heat flux, temperature discontinuity and ultimately interfacial conductance using the atomistic nodal approach. Pythode code is also presented as a workflow to illustrate the process of obtaining interfacial thermal conductance in the 'cube.ipynb' file.

Related codes for Generative learning of morphological and contrast heterogeneities for self-supervised electron micrograph segmentation

A molecular dynamics approach to study the permeation of nanoparticles through lipid bilayer

PBM-CFD solvers for predicting particle size distributions

"aggregate_gen" -- An efficient C++ code for generating fractal cluster of spheres

Desktop application for detection size and shape of gold nanoparticles and nanorods from TEM image (bachelor's project)

Iterative Particle Analysis Tool introduced in paper https://academic.oup.com/mam/advance-article/doi/10.1093/micmic/ozad036/7162605

[AAAS 2025] NEXT 3D is a preclinical tool to optimize nanoparticle designs for BBB penetration in the treatment of glioblastoma multiforme, a proliferative central nervous system cancer.

NanoTrackJ is an ImageJ/Fiji plugin to characterize the size of nanoparticles by its diffusion trajectories.

A python package for packing nanoclusters into supramolecular cages.

A theoretical framework proposing a de Broglie–Schwarzschild resonance between quantum wave behavior and gravitational mass in engineered systems of tungsten toroid, graphene, and nanoparticle cloud.

Semi-supervised VAE for data with the rotational disorder

Nanotribology Simulation Framework. Create modern workflows to automate the study of friction wear with Lammps and OVITO 🚀

A simple kinetic algorithm to create Reaction-Limited-Cluster-Aggregates (RLCA) of charged particles and simulate their electrostatic double-layer utilizing the Singularity Method. Constant potential and constant charge as surface charge regulation models can be used.

C++ template library for Discrete Element Method (DEM) simulations

Paper on how to supress background while imaging gold nanorods through the use of the anti-Stokes emission.

Simple Python scripts for interfacing with ADDA to calculate the plasmon of nanoparticles

Produces neutralized nanoparticles (made up of Fe2O3 unit cells from the standard Fe2O3 .cif file) in .lmp format. Uses the Ovito python library to accomplish this.

INSA 4GP Multi-Project Computer-Vision and Deep-Learning for NPs Identification and Classification

Scripts to compute field enhancements of plasmonic nanostrucutres, mirrored from https://gitlab.com/theoretical-chemistry-jena/quantum-dynamics/plasmonic-meep/

Code for simulating Mie scattering by nanoparticles.

The Nanocluster interpolation Scheme Program (NISP) is designed to perform an interpolation scheme that gives idea of the types of icosahedral, decahedral, and octahedral clusters that may exist at selected sizes.

Analyze two-component nanoparticle properties for classical molecular dynamics simulations

This is a computational exercise for learning about silver nanoprisms and why their colour is related to their diameter. Runs in Google Colab and uses Python3. Designed for high school students.

Work in progress of my plasmonics package, so far it does basic things like calcualte scattering cross sections. I'm working on the interaction with the wavefronts and the plasmon and electric field interactions using FDTD

PBPK Modeling For Therapeutic Nanoparticles Loaded With Drug