R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass tag (TMT) labeling

`sdrf-pipelines` is the official SDRF file validator and converts SDRF to pipeline configuration files

Converter functions for the MSstats package

Simulation tool for optimal design of high-dimensional MS-based proteomics experiment

R-based package for detecting differencially abundant post translational modifications (PTM) in shotgun mass spectrometry-bsed proteomic experiments with tandem mass tag (TMT) labeling

Converter from Census TMT output file to the input of MSstatsTMT

🔍 Optimize multi-objective tasks with Tchebycheff scalarization for better alignment and efficient Pareto frontier exploration.