⚕️ An educational tool to visualise k-space and aid the understanding of MRI image generation

Code for analyzing medical images saved as .dicom files

No description provided.

BreastDCEDL is a deep learning–ready DCE-MRI dataset of 2,070 breast cancer patients, sourced from I-SPY1, I-SPY2 and the DUKE cohort.

input ct data use U-net method systh mri

Basic reconstruction scripts for data uploaded to mridata.org

A Matlab toolbox for examining the quality of structural (SNR) and functional (tSNR, SFNR) MRI

Flexible bidsificator for multimodal datasets

Deep-learning (U-NET) CNN model for fully automatic glioma segmentation in 3D volume of MRI data, Survival prediction using different algorithms

A CNN based algorithm with 91% accuracy for brain tumor detection.

"Octopus Realtime Encephalography Lab" is the (hard) real-time networked EEG-lab framework I have developed during my PhD Thesis at Brain Research Lab of Hacettepe University Faculty of Medicine Biophysics Lab. It is meant to be a holistic golden-standard solution for all tasks of cortical source localization/networking, brain-computer interfaces and neuro-feedback applications.

We developed a guide for researchers in the Netherlands who want to share brain MRI data to help them get started.

Fully supervised, healthy/malignant prostate detection in multi-parametric MRI (T2W, DWI, ADC), using a modified 2D RetinaNet model for medical object detection, built upon a shallow SEResNet backbone.

Forked to 'github.com/uwmri/QVT'

Code to run and analyze fMRI study of somatosensory detection task

Collection of virtual objects for numerical MR experiments.

No description provided.

Detection and removal of biases from brain MRI using adversarial architectures. This was my final project for CS 231n (Convolutional Neural Networks for Visual Recognition) at Stanford.

Graduate k-space masking for MRI image denoising and blurring (on the example of Agilent FID data). (Python 3)

A Machine Learning project predicting dementia progression from MRI data using SVM, One-vs-Rest and One-vs-One classifiers

Extracting MRI sequence header data (Magnetic field, Echo Time, Frequency, etc.) from JSON files (.json)

Calculating theoretical MRI images with both TI (T1-weighting) and TE (T2-weighting) of choice, from separate T1-weighted and T2-weighted sets of images. (Python 3)

k-space weighting and masking for denoising of MRI image without blurring or losing contrast, as well as for brightening of the objects in the image with simultaneous noise reduction (on the example of Agilent FID data). (Python 3)

Simulating T1- and T2-weighted MRI images with arbitrary values of TI or TE, respectively. (Python 3)

Tool for calculating swelling tablet eroding front's diffusion rate D and the rate of the swelling k from time series of either T2-maps or MRI images in FDF or Text Image format. (Python 3)

Multivariate Normative Modeling Kit

Docker container for FiberNavigator for Brainlife.io

Guide to perform cerebral blood flow (CBF) processing on an arterial spin labelling (ASL) image with ANTs and FSL. The required codes are provided and explained.

This project was a Ferrari for my Master's in Neuroscience. A new routine using multi tools, in command lines structure, to execute structural connectivity analysis (fow windows users). Uses BrainSuite, MatLab Toolboxes: SPM12/Tractconnect, and others. I did not use CHATGPT!!!

MATLAB code for extracting, converting and anonymising files in CTF MEG proprietary format.