The TemplateFlow Archive - A DataLad super-dataset

Code examples of the free course in Youtube of brain MRI preprocessing techniques in python

Neural network-based MRI preprocessing: Prep 🧠 images in seconds 🔥

No description provided.

Computational Anatomy Toolbox for SPM12 or SPM25

3D Visualization of Brain MRI

A workflow to allow Freesurfer recon-all to run on brain image with gliomas

Federated learning with homomorphic encryption enables multiple parties to securely co-train artificial intelligence models in pathology and radiology, reaching state-of-the-art performance with privacy guarantees.

Codebase for Conditioned Diffusion Models for Unsupervised Anomaly Detection

The following is a new architecture for robust segmentation. It may perform better than a U-Net :) for binary segmentation. I will update the code when I have some spare time within the next month. However you can simply read this one and will soon notice the pattern after a bit

A python framework for creating image-guided cancer patient digital twins.

An Open-Source End-to-End Pipeline for Spiral Magnetic Resonance Image (MRI) Reconstruction in Julia

Javascript engine for 3D brain model (used by RAVE project)

[WACV'25] Official implementation of "PK-YOLO: Pretrained Knowledge Guided YOLO for Brain Tumor Detection in Multiplane MRI Slices".

mrQA: tools for quality assurance in medical imaging datasets, including protocol compliance

The study works on generating CT images from MRI images, where unsupervised learning was used using VAE-CycleGan. Since the number of samples included in the data set used in the study, and therefore in this case we are in a state of epistemic uncertainty, therefore probabilistic models were used in forming the latent space.

A Matlab toolbox for examining the quality of structural (SNR) and functional (tSNR, SFNR) MRI

This Machine Learning course project is on 3D MRI image analysis for Alzheimer's disease prediction. Transfer Learning is used for classification and analysis of images.

A brain MRI segmentation tool that provides accurate robust segmentation of problematic brain regions across the neurodegenerative spectrum. The methodology is generalisable to perform well with the typical variance in MRI acquisition parameters and other factors that influence image contrast.

Non-parametric T2 relaxometry methods for myelin water quantification

Threshold-free cluster enhancement toolbox for Matlab

Official implementation of the paper "Challenging Current Semi-Supervised Anomaly Segmentation Methods for Brain MRI" accepted to the MICCAI 2021 BrainLes workshop

Tools for MRI classification of Alzheimer's disease using 3D CNN networks

A toolbox for NIfTI and Analyze medical image visualization, editing, and 3D rendering

This repository aims to present a general, customazible pipeline for MRI images based on a single configuration file (in .json format) that has different flags and according to them, a certain pre-processing procedure with desired steps is performed.

Codebase for Unsupervised Anomaly Detection using Aggregated Normative Diffusion (ANDi)

GOUHFI: novel contrast- and resolution-agnostic segmentation tool for both Ultra-High Field and lower field MRI

A deep learning project using PyTorch to classify brain tumors from MRI images into categories like No Tumor, Pituitary, Glioma, and Meningioma.

Digital Twins for Computational Oncology

FaBiAN is the first Fetal Brain magnetic resonance Acquisition Numerical phantom that simulates realistic T2-weighted magnetic resonance images of the developing fetal brain throughout gestation. It is open source and supports reproducibility studies to improve fetal brain diagnosis.