Bioconductor cheat sheet

Python library to access Gene Expression Omnibus Database (GEO)

Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq

🍪 SEnsible Step-wise Analysis of DNA MEthylation BeadChips

R package for normalizing RNA-seq data to make them comparable to microarray data.

Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously

Easy Copy Number !

Cross-platform GUI desktop application for making biological heatmaps

Microarray Analysis Pipeline in Python

🔬 R package: Analysis of Large Affymetrix Microarray Data Sets

analyze_geo_microarrays.py : Differential expression analysis of published microarrays datasets from the NCBI Gene Expression Omnibus (GEO)

Bioinformatics course project - Fall 2020, analysis of genetic expression omnibus (GEO) data series of Acute Myeloid Leukemia

Collection of gene expression datasets

Genomic data manipulation tool

SAGA: Simulated annealing aided genetic algorithm for gene selection from microarray data

Latex scripts to compile my PhD thesis

bimodal DNN for NSCLC patient overall survival prediction

Deconer: A Comprehensive and Systematic Cell Type Deconvolution Evaluator

R package for visualization of omics data

bioTEA - A user friendly tool to perform transcript expression analysis

A toolkit for navigating and analyzing gene expression datasets

Temporal Integrative Genomics Analysis in R

An R package for utilities to guide in-depth detection of circadian signals from omics time series data

scrape REVIGO Gene Ontology web app and plot results

design of primers and probes for PCR/microarray by visual selection from aligned DNA sequences

A simple program to generate .vcf and plink format files from .idat files

PhD thesis supplementary materials

Integrated analysis of Cross-platform MicroArray and Pathway data

SparkRMA: Robust Multi-array Average (RMA) In Apache Spark

Bayesian Gene Selection Criterion (BGSC) approach