22 results for “topic:membrane-proteins”
Prolint2 is an optimized tool for analyzing and visualizing lipid-protein interactions from molecular dynamics trajectories.
The ProLint Webserver
A software for membrane analysis and subtraction in cryo-EM.
The Website of the Ramiréz Lab
A software for membrane analysis and subtraction in cryo-EM.
A Python package designed for analyzing the internal degrees of freedom within molecular structures, focusing particularly on membrane proteins. It conducts statistical analyses, providing deep insights into the dynamics and flexibility of molecular interactions. Ideal for finding the most flexible regions within a protein.
A small Python package to set up electrostatic solvation free energy ("Born energy") calculations of an ion in a membrane protein and calculate the electrostatic free energy with APBS .
Map the depth on a PDB file
Dataset of the "Integrative Modeling of Membrane-associated Protein Assemblies" manuscript
Calculation of cross sectional area profiles from MD simulations of membrane proteins.
MCP-ANM/mANM with PRS for membrane tension & tethering
A gromacs tutorial for creating a gromos54A7 simulation system of a protein in a simple membrane
Code for the manuscript "Application of Protein Structure Encodings and Sequence Embeddings for Transporter Substrate Prediction".
A statistical model to predict heterologous membrane protein expression in E. coli!
Membrane helix prediction with SVMs
Membrane alpha helix packing and orientation predicrtor
Source code for building the EncoMPASS database
MPLID (Membrane Protein-Lipid Interaction Database): A large-scale experimentally-validated dataset of residue-level protein-lipid contacts from 2,792 membrane protein structures.
TooT-PLM-ionCT: A bioinformatics framework utilizing protein language models for accurate classification of ion channels and ion transporters from membrane proteins.
Documentation
a database of membrane binding sites in intrinsically disordered regions of human transmembrane proteins
uwseds-group-OPMxplore created by GitHub Classroom