A collection of resources on applications of Transformers in Medical Imaging.

Medical image registration using deep learning

[ICCV 2019] Recursive Cascaded Networks for Unsupervised Medical Image Registration

[ICCV 2023] A curated list of resources on implicit neural representations in Medical Imaging

Medical Image Registration

uniGradICON: A Foundation Model for Medical Image Registration (MICCAI 2024)

This project contains command line tools to perform rigid, affine and non-linear registration of nifti or analyse images as well as utilities

(This repo is no longer up-to-date. Any updates will be at https://github.com/DeepRegNet/DeepReg/) A demo of the re-factored label-driven registration code, based on "Weakly-supervised convolutional neural networks for multimodal image registration"

A Comprehensive Survey of Mamba Architectures for Medical Image Analysis: Classification, Segmentation, Restoration, and Beyond

Fully unsupervised 2D/3D image registration with ConvNet (TensorFlow)

[MICCAI 2024] On-the-Fly Guidance Training for Medical Image Registration. Pre-print available in link below.

Preprocessed IXI brain MRI dataset with subcortical segmentation

MvMM-RegNet: A new image registration framework based on multivariate mixture model and neural network estimation (MICCAI 2020)

Code used to create the DeepHistReg submission to the ANHIR challenge.

Medical Image Analysis Lab (MIALab), University of Bern

Efficient dense deformable image registration

Joint Vessel Segmentation and Deformable Registration on Multi-Modal Retinal Images based on Style Transfer

TensorFlow implementation of the diffeomorphic demons algorithm for medical image registration

Affine medical image registration using deep learning

Official repository for LiftReg: Limited Angle 2D/3D Deformable Registration.

DeDA: Differentiable Image Integration Library

[STACOM-MICCAI 2019] Deep Learning Registration for Cardiac Motion Tracking

[ICCV 2023] Code for the paper "Preserving Volume for Unsupervised Registration"

This repository applies the affine and deformation transformation on the CT scan in the subject space, and register it to the MNI 1mm space

[ICPR 2024] FNOReg: Resolution-Robust Medical Image Registration Method Based on Fourier Neural Operator

Official PyTorch code base for our BMVC 2024 published paper NCA-Morph: Medical Image Registration with Neural Cellular Automata.

Head and Neck Medical Image Registration

Use Bspline in simpleITK to transform images and show the deformation flow

X-Metric: An N-Dimensional Information-Theoretic Framework for Groupwise Registration and Deep Combined Computing (TPAMI 2023)

Projects that I was part of during my Master's study in Medical Imaging and Applications Erasmus program (MAIA) between 2017-2019.