Reference and citation map for literature review and discovery

Literature Scanner: Automated collection & analyses of the scientific literature.

Retrieve PubMed articles, text-mining annotations, or molecular data from >35 Entrez databases via easy to use Python package - built on top of Entrez E-utilities API.

Automated meta-analysis of event-related potential (ERP) research.

A web scrapping method to extract journal information from PubMed and Google Scholar using Python.

A powerful Unix-inspired command-line tool for searching scientific literature, built for terminal enthusiasts who prefer speed, automation, and minimal interfaces.

The program can be used to scrape the content from an article from web by an input of a set of URLs in a text file or a URL. This project uses newspaper3k and python-docx libraries. The output of this program will give a neatly modified Word Document in '.docx' format with the contents of the article.

Datasets de los textos de cuentos de varios autorxs latinoamericanxs. Datasets benchmarks de distintas librerías de sentiment analysis en español sobre un corpus de borges.

Analysis code for knowledge discovery project

Easiest way to get your bibliometrics data ready and prepared

Antibody Watch: Text Mining Antibody Specificity from the Literature

Python module to use the annotations created with NeuroCurator, for example in a Jupyter notebook.

get recommendations from arxiv based on your zotero library

MeTeOR, or the MeSH Term Objective Reasoning network, is a network representation of genes, drugs, and diseases built on MeSH terms curated by the National Library of Medicine

Set of Transforms for exploring the academic literature

Named Entity Resolution, Extraction, and Linking of Lexically Similar Names

A wrapper for the scholarly library to scrape Google Scholar entries through a keyword search, and add suggested DOIs using CrossRef with habanero.

R package to batch download PDFs from a Web of Science search

A web app (wordsworth.us) to identify anachronistic words & phrases in historical fiction by comparing it to fiction written during that era. Hackbright Fellowship final project.

Semantic Capture of Relationships In Biological Literature (scribl)

An app for myself to search PubMed literature

Consegue um algoritmo distinguir os vários heterónimos de Pessoa? Uma viagem por processamento de linguagem natural.

CRISP-DM for Augmented Relevant Literature Search

Analyzing 11 years of CHI conference papers (2011-2021) with machine learning.

Gut microbiome study (from 2000 to 2020)

paper: https://link.springer.com/chapter/10.1007/978-3-031-78093-6_1

Datasets, tools and results from my doctoral dissertation

Using NLP techniques, finding new relations and discoveries in Biomedical Literature(Vitiligo disease literature).

LitGene: An Interpretable Transformer Model Integrating Text and Ontology for Gene Representation LearningPaper code

GenLit automates discovery of disease-associated genes & variants through NLP-powered literature mining (PubMed/PMC), ClinVar integration, and optional Perplexity AI cross-validation for systematic curation