Data toolkits for processing NMR, MALDI MSI, MALDI single cell, Raman Spectroscopy, LC-MS and GC-MS raw data, chemoinformatics data analysis and data visualization.

Data Mining and Analysis of Lipidomics datasets in R

pyQms, generalized, fast and accurate mass spectrometry data quantification

A Deep Learning Framework to Interpret Raw Mass Spectrometry (m/z) Data

metaX: a flexible and comprehensive software for processing omics data.

Guide to processing raw LCMS metabolomic and lipidomic data using MS-DIAL, followed by data pre-processing and secondary annotation (of metabolites) in R.

Maven GUI: Metabolomics Analysis and Visualization Engine

Python module for lipidomics LC MS/MS data analysis

A collection of awesome lipidomics tools and resources

LipidLynxX provides the possibility to convert, cross-match, and link various lipid annotations to the tools supporting lipid ontology, pathway, and network analysis aiming systems-wide integration and functional annotation of lipidome dynamics in health and disease.

Intrinsic Peak Analysis (IPA) pipeline for peak-picking in large-scale untargeted small molecule analysis including metabolomics, lipidomics, exposomics, and environmental studies.

Goslin is the Grammar on succinct lipid nomenclature.

profiler desktop versions

R package for Analyzing Lipidomic Datasets

LipidHunter is capable to perform bottom up identification of lipids from LC-MS/MS and shotgun lipidomics data by resembling a workflow of manual spectra annotation. LipidHunter generates interactive HTML output with its unique six-panel-image, which provides an easy way to review, store, and share the identification results.

Git repository for the R package "LOBSTAHS" (Lipid and Oxylipin Biomarker Screening Through Adduct Hierarchy Sequences)

United Formula Annotation (UFA) for LC-HRMS data

Spatial Analysis of Multiomics Measurement in R

Small Molecule Mass Spectrometry Data Post-Processing, Quality Control, Exploration and Reporting

No description provided.

This project aims at defining a set of guidelines for reproducible mass spectrometry-based experiments.

Alzheimer's Disease Neuroimaging Initiative: Untargeted Lipidomics Analysis

A light weight and fast parser for reading mzML, mzXML and netCDF data files

ADViSELipidomics is a novel Shiny app for the preprocessing, analysis, and visualization of lipidomics data.

The R-language bindings for mzTab-M

A DMS Shotgun Lipidomics Workflow Application to Facilitate High-Throughput, Comprehensive Lipidomics

Collection of scripts for improving lipid constraints in yeast-GEM

A toolkit for processing targeted small molecule mass spectrometry data

Galaxy tools for Python package DIMSpy: data processing of Direct-Infusion Mass Spectrometry-based metabolomics and lipidomics data

MetaboLink: Shiny app for metabolomics and lipidomics data processing.