⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.

kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.

Bioinformatics 101 tool for counting unique k-length substrings in DNA

KmerCamel🐫 provides implementations of several algorithms for efficiently representing a set of k-mers as a masked superstring.

Analysis of DNA Sequence Classification Using Neural Networks - Bioinformatics Course Project - Winter 2022

fast and comprehensive k-mer counting package

Very large scale k-mer counting and analysis on Apache Spark.

Tetemer, an R package and Shiny app for interactively fitting population parameters to k-mer spectra of diploids, triploids, and tetraploids (allo and auto)

K-mer counting algorithms and count-data utilities for the BioJulia framework

Screening Historical Events of Recombination in a Phylogeny via Ancestral Sequences

Extract kmers, skipmers, minimizers.

Alignment-free method to identify and analyse discriminant genomic subsequences within pathogen sequences

Extract SNPs and accessory differences in closely related bacterial genomes from k-mers

Rapid, Alignment-free, Phylogenetic Placement via Ancestral Sequences

bit-packed k-mers methods for Golang

A naive implementation of a k-mer counter in Python, takes fasta files and k-mer length requests and outputs all k-mers of length k, their reverse complement, and their frequency within their respective sequence for each sequence in the file.

The generation of a kmers dataset that is associated with multiple gene sequences and the further manipulation of this generated dataset are the main contents of the current project.

Convert python string to hashed kmers and back again

reference-free base quality score recalibration

Visualization package for kmeRs similarity score matrix

Evaluation of Statistical Linear Models for Genome Virus Classification

Generate K-mer spectra to observe modalities of distributions

NAUniSeq: A fast computational pipeline to search unique sequences for microbial diagnostics

No description provided.

A collection of various biopython scripts.

An algorithm for finding SNPs of a long read compared to a reference genome

Este projeto foi desenvolvido como trabalho prático da disciplina Tópicos em Bioinformática e tem como objetivo implementar um sistema para reconstrução de sequências genéticas a partir de fragmentos conhecidos como k-mers.

A project implementing and visualizing graph-based algorithms to solve the string reconstruction problem, forming the theoretical basis for modern de novo genome assembly.

Python assignment for my Bio-535 course at URI, Spring 2018.

Alignment-Free phylogenetic tree construction from .fasta sequence files