Near-optimal RNA-Seq quantification

Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-droplet detection

A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing

A guide to using a Seurat object in conjunction with RNA Velocity

kallisto | bustools workflow for pre-processing single-cell RNA-seq data

A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.

A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools

Nextflow Alignment Pipeline - from fastq.gz to sorted bam/cram with ease

RNA-seq Analysis Pipeline Testing and Optimization Resource - Intelligent pipeline selection and comprehensive benchmarking.

Identification of viral RdRPs in single-cell RNA sequencing data

RNA-seq analyses.

Running state-of-the-art RNA-seq abundance quantification software "kallisto" on UPMEM DPU system

Automated and friendly RNA-seq analysis (deprecated)

Evaluating HISAT2, Salmon and Kallisto alignment using Checkpoint Blockade treated CT26 Experimental Data

Estimate fastq-formatted read abundace in RNA-Seq analysis with Kallisto

Transform, query, and merge tabular files with the expressionable Python module. This tool is used primarily for gene-expression data.

Transform, query, and merge tabular files with the expressionable command-line tool. This tool is used primarily for gene-expression data.

RNAseq pipeline examples

Iso-seq and Kallisto integration

kallisto task for RNA-seq workflow

docker file for genomic tools

Análise de RNA-seq - Abundância de Transcritos Utilizando kallisto, tximport e DESeq2

Assembly of RNA transcriptome, differential expression analysis, identification of lncRNA candidates based on genomic context and protein coding potential.

Análises de expressão diferencial de dados de sequenciamento de segunda geração (high-throughput sequencing reads, RNA-seq) realizadas utilizando as ferramentas kallisto.

Automated and friendly RNA-seq analysis (migrated to Parse Server)

Project Work - DH607

RNA-seq benchmarking toolkit including UTR annotation, quantification (STAR+Salmon, Salmon, Kallisto), multimapping evaluation, and optional simulation scripts.

No description provided.

GenePattern Notebook running Kallisto

No description provided.