Agent-based modeling framework in Julia

Ark -- Archetype-based Entity Component System (ECS) for Go.

Arche -- Archetype-based Entity Component System (ECS) for Go.

nlrx NetLogo R

Archetype-based Entity Component System (ECS) for Julia

R Package for individual based epidemiological models

Epidemiology modelling framework for the Thanzi la Onse project

Covid Epidemics Simulation with Simpy

Multiscale Modelling Tool - mathematical modelling without the maths

Everything you need to rapidly build a model with the Arche Entity Component System (ECS).

A spatially explicit trait- and individual-based microbial systems modelling framework

DEPONS model: Simulating effects of disturbances on the North Sea harbour porpoise population

Spatial individual-based model of malaria with a focus on drug resistance evolution.

HostSwitch: An R Package to simulate host switching by a parasite

OpenGL graphics and plots for the Arche Entity Component System (ECS).

Taskview for all IBM related 📦 packages in the R universe

🔮🔄 Presentation for the 6th Meeting of the Agent-Based Model Study Group at University of São Paulo

How does disturbance on a landscape affect the establishment of new polyploid plant species?

Individual-based model to simulate the evolution of movement strategies under risk of pathogen spread.

Mini project (5ECTS) as part of the MSc Biology (University of Groningen), aiming to increase the efficeincy and speed of DAISIE model simulations.

A spatially explicit (1D) individual-based model for large river fish

Source code of the model used in Cornejo-Donoso, J., Einarsson, B., Birnir, B., Gaines, S.D. (2017) Effects of fish movement assumptions on the design of a marine protected area to protect an overfished stock. PlosONE 12(10): e.0186309 https://doi.org/10.1371/journal.pone.0186309

Within Host Dynamics

Supplementary material for "Identifying density-dependent interactions in collective cell behaviour"

Repository for developing sediment module for OpenDrift for modeling flow of particles in Glomma

System to simulate individual interactions and capture ecological and evolutionary dynamics

Python individual-level SIRD model for studying vaccination prioritization

Individual-based metapopulation model of devil facial tumour disease.

Tools for modeling measles

Individual-based model for assessing the effects by-catch, ship noise etc. on harbour porpoises in the inner Danish waters