48 results for “topic:indels”
Structural variant and indel caller for mapped sequencing data
Strelka2 germline and somatic small variant caller
Structural variation and indel detection by local assembly
Microassembly based somatic variant caller for NGS data
ClairS - a deep-learning method for long-read somatic small variant calling
ABRA2
The Platinum Genomes Truthset
A method for variant graph genotyping based on exact alignment of k-mers
Generic human DNA variant annotation pipeline
Indigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products
Dockstore implementation of CGP core WGS analysis
Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model
A tool to identify and annotate homoplasies on a phylogeny and sequence alignment
A suite of bioinformatics data processing and analysis pipelines, software, and training resources for common methods.
Snakemake-based computational workflow for neoantigen prediction from diverse sources
A ToolKit to perform a Meta-analysis of Genome-Wide Association Studies
A workflow to analyse sequence mutations in CRISPR-CAS9 targeted amplicon sequencing data
xGAP is an efficient, modular, extensible and fault-tolerant pipeline for massively parallelized genomic analysis/variant discovery from next-generation DNA sequencing data.
:whale: Dockerized WES pipeline for variants identification in mathced tumor-normal samples
Barton and Zeng (2019) - Pipeline for great tit indel analysis.
A tool suite for a simple, streamlined and rapid evaluation of variant callsets
A Platypus-based variant calling pipeline for cancer data
A Platypus-based workflow for indel calling
Barton and Zeng (2018) - Pipeline and scripts for popgen analysis of whole-genome drosophila data.
An advanced genotyping pipeline by next-generation sequencing (NGS) technology
NGS data analysis scripts for HBV elimination research group
Pipelines for SNVs and InDels calling (single sample and joint) in WEGS, WGS, and WES using GATK.
Scripts used in MDV project
gappy2 is the successor of gappy v1
Dockstore implementation of CGP core WXS analysis