ImageJ macros and scripts written at the imaging facility MRI

ImageJ's plugin for directional analysis in images: color-coded analysis, distribution of orientation, vector field, keypoint detection

Flow-Registration toolbox for 2P motion compensation

Plugins for bone image analysis

ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing

Image processing software for textbooks by W. Burger & M. Burge

Imagej macro to calculate the MTF based on a knife edge measurement

Collaborative Approach for eNhanced Denoising under Low-light Excitation

Curve tracing ImageJ plugin

ImageJ plugin detecting and colocalizing particles of given size (vesicles, dots, etc on biological microscopy images)

Detection of Molecules plugin for ImageJ: SMLM 2D/3D localizations, drift and chromatic aberration correction, etc

ImageJ library to detect and analyse connected components (blobs) in binary images

Raw Bayer pattern to color image converters

Error Level Analysis (ELA) in ImageJ

A set of ImageJ plugins to quantify dynamics, morphology, and fluorescence of microglial cells.

ImageJ plugin reading PicoQuant ptu/pt3 FLIM image files

Fiji plugins for the creation of binary and semantic masks from ROIs in the RoiManager. Works with stacks too.

ImageJ plugin to read xrm files.

FijiRelax: 3D+t multi-echo spin-echo sequences MRI analysis

Fiji / ImageJ plugin for Imaging Alignment. This plugin manages two types of alignment: Manual Alignment and Automatic Alignment.

An ImageJ plugin to quantify ciliary shape, length, and fluorescence.

A plugin to combine power of mouse and keyboard control with image processing and analysis tools in ImageJ

ImageJ scripts for stereology and morphometry

sbt-imagej is an SBT (Simmple Build Tool) plugin that that helps with development of ImageJ plugins

ImageJ plugin making kymographs of maximum or average intensity with wide lines, polylines, curves

Digital Holographic Microscopy plugin for ImageJ. Allows realistic simulation and real-time reconstruction of single-shot holograms.

v0.1.0, Adaptive Median fiter - imageJ plugin

EVAnalyzer 1 - EV analyzing plugin for Fiji

😎 Awesome lists about ImageJ Plugins!

ImageJ Plugin Library for 2D reconstruction (back-projection and filtered bp)