Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute

📚 Tools and databases for analyzing HLA and VDJ genes.

Deep learning framework for proteomics

Precision HLA typing from next-generation sequencing data

Mirror of OpenRTI on SourceForge. Do not create PR's. Instead send patches or git pull commands to the mailing list on SF.

CERTI is an Open Source HLA RTI. HLA (High-Level Architecture) is a general purpose architecture for distributed computer simulation systems. In HLA systems, the RTI (RunTime Infrastructure) manages data exchange between simulations. CERTI supports HLA 1.3 specifications (C++ and Java) and partial IEEE 1516-v2000 and IEEE 1516-v2010 (C++) . CERTI is open source software (GPL, libraries are LGPL).

HLA-II ligand predictor.

As a part of COVID-19 Host Genetics Initiative, we perform the following set of analyses to better understand the genetic basis of COVID-19 susceptibility and severity.

Kourami: Graph-guided assembly for HLA alleles

Fork of the Polysolver project

R package – HLA Genotype Imputation with Attribute Bagging (development version only)

A collection of modules to process and analyze IMGT-HLA sequences.

An HLA star-calling tool for PacBio HiFi data types

IDE for the HLA language, written in HLA. Self compiles using HIDE

📂 HLA allele frequencies in tab-delimited format, downloaded from AFND.

The repository contains all the code for the paper amino acid encoding using deep learning application

HLA typing for Sanger Based Test

HLA ARD Reduction in Python

For IVCT Framework Developers. Core System for the IVCT (Integration, Verification and Certification Tool) for HLA Federates

🐶 hlabud: HLA genotype analysis in R

Code to run the scHLApers pipeline for personalized single-cell HLA quantification

Modifications for Half-Life on GoldSrc. Includes active development of Cold Ice Remastered.

DL model to predict HLA peptide presentation

🛜 An interactive browser for the VDJdb database

Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.

R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping, analysis of HLA evolutionary divergence as well as HLA-KIR interactions.

RACoN - RTI abstraction component for MS.NET (RACoN)

A script to run HLA typing tools from next generation sequencing data

DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions

TransHLA: A hybrid transformer model for peptide-HLA epitope detection.