59 results for “topic:high-throughput-sequencing”
Python library to access Gene Expression Omnibus Database (GEO)
nim wrapper for htslib for parsing genomics data files
VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications
Sequence alignment tools
Find and visualize rearrangements in DNA sequences
Assembly of Phylogenomic Datasets from High-Throughput Sequencing data
Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.
vSNP -- validate SNPs
A toolset for handling sequencing data with unique molecular identifiers (UMIs)
command-line querying+conversion of bigwigs and a nim wrapper for dpryan's libbigwig
mGEMS Genomic epidemiology with mixed samples
Infer metadata for your downstream analysis straight from your RNA-Seq data
mSWEEP High-resolution sweep metagenomics using fast probabilistic inference
use the noise
uORF-Tools are a workflow and a collection of tools for the analysis of 'Upstream Open Reading Frames' (short uORFs)
vSNP -- validate SNPs
Bayesian modelling approach for detecting RNA flexibility changes in high-throughput structure probing data under different conditions, based on an extension of the BUM-HMM method.
Processing, quality control and analysis of GAM datsets
Sargasso disambiguates mixed-species high-throughput sequencing data.
basepair bio: a single binary with many useful genomics subtools.
Resolution-independent normalization of Hi-C data
No description provided.
Comparison of gene usage in immune repertoires under different biological conditions
nim-lang wrapper for https://github.com/38/d4-format
ExpoSeq is a pipeline to process and analyze in various visualizations ngs data from phage display campaigns
Barcode Generator
Perl, R, Python, and Bash Shell source codes for high-throughput sequencing (the 2nd, 3rd, and 4th generation sequencing for DNA, RNA, and Protein) data analysis by integrating lots of open-source tools or softwares.
No description provided.
Custom plugins for the MultiQC tool.
Given a set of BAM files and a gene annotation BED file, calculates the Transcript Integrity Number (TIN) for each transcript.