13 results for “topic:gisaid”
HDR UK - Resources for 🦠COVID-19 Research
Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories
A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV rebuilds.
A selenium spider for GISAID
This project tries to give a glimpse of the different variants of SAR-CoV-2 in the world.
Processing GISAID SARS-CoV-2 emerging variants data and generating a language model using Transformers. The model semantically captures masked glycoprotein amino acid mutations in emerging variants of the SARS-CoV2-virus and gives appropriate scores for each potential aa change.
Access the GISAID Flu database using Python
This tool can be used to download the samples and metadata from GISAID provided you have an existing account with download privileges.
Assisted download of selected samples from GISAID
Repository with codes to the paper 'Combining genomic data and infection estimates to characterize the complex dynamics of SARS-CoV-2 Omicron variants in the United States'
This repo summarises the data sources, web application, tools and reviews paper of SARS-Cov-2. Trace the study progress of SARS-Cov-2 based on GISAID data.
A tool to filter the full fasta sequences from GISAID.
Simple Discord bot that scrapes GISAID SARS-CoV-2 variant frequencies