Fast and efficient conversion of Nanopore modBAM from guppy basecaller to BED files for differential methylation and machine learning predictions

Analyzing the genomic and metagenomic features of SGB748 MAGs from oral samples to uncover their role in health and peri-implant diseases through patient metadata integration.

A comparative genomic analysis carried out with genomic tool kits such as SAMtools , BCFtools , MAFFT as well as phylogeny softwares such as iTOL.

Framework for standardized bee genetics: JSON-LD metadata, ethical protocols, governance with FAIR/CARE principles. Privacy-by-design, automated compliance, tiered access. Supports reproducible genomics for conservation, agriculture, climate studies with data sovereignty.

This project was conducted as part of the HIDS-7003-01 Final Project to explore molecular and immune-related changes in Bladder Cancer using genomic data.

Data associated with Ferrante et al. 2021 - Conservation Genetics

A modular genomic toolkit focused on automated primer design, sequence validation, and workflow orchestration. Built for reliability, reproducibility, and scalable bioinformatics workflows.