Python library to handle Gene Ontology (GO) terms

Deep functional residue identification

Source ontology files for the Gene Ontology

Schema and generated objects for biolink data model and upper ontology

[ICLR 2022] OntoProtein: Protein Pretraining With Gene Ontology Embedding

python library for working with ontologies and ontology associations

Bio4j abstract model and general entry point to the project

:books: Biomedical knowledge mining using GOSemSim and clusterProfiler

GO enrichment with python -- pandas meets networkx

Function prediction using a deep ontology-aware classifier

Basic and Advanced OBO Graphs: specification and reference implementation

:golf: GO-terms Semantic Similarity Measures

Material for GO OWL/Protege Tutorial

A collection of metadata, tools, and files associated with the Gene Ontology public web presence.

A standalone interactive application for detecting biological significance on a set of genes

Transcripts annotation and GO enrichment Fisher tests

A repository for the Playbook Workflow Builder project.

Gene ontology (GO) semantic similarity library for Python

ChIP-seq/RNA-seq analysis software suite for gene expression heatmaps

Unsupervised neural network for learning embeddings of GO terms.

GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF

A Heterogeneous Graph Transformer (HGT)-based model for protein function prediction using biological knowledge graphs and protein language models

Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method

scripts for parsing PDB, fasta, and GO

The Gene Ontology Helpdesk

Automated pipeline for enrichment analysis in non-model organisms !

This package contains the BLAST Viewer Tool.

GOMAP-Singularity is the containerized version of GOMAP

Isoform function prediction and interpretation

R Package for Gene Ontology Label Discernment and Identification.