A Cloud Native Batch System (Project under CNCF)

Genome annotation with AUGUSTUS

Visualize and annotate genomic coverage with ggplot2

A high performance and compression ratio compressor for genomic data, powered by GTXLab of Genetalks.

Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools

MyGene.info: A BioThings API for gene annotations

Gene fusion detection and visualization

Extract 3'UTR, 5'UTR, CDS, Promoter, Genes, Introns, Exons from GTF files

An elegant package to visualize gene structures

API for linked biological knowledge

🧬 Gene analysis toolkit based on R

Generic human DNA variant annotation pipeline

A minimal desktop app for easy and convenient gene annotation and lookup.

A python package and a set of shell commands to handle GTF files

Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline

Camoco is a fully-fledged software package for building co-expression networks and analyzing the overlap interactions among genes.

R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/

Annotate DNA sequences for Gene Ontology terms

A standalone interactive application for detecting biological significance on a set of genes

Fusion ICA Toolbox (MATLAB)

Explore and download data from the recount3 project

:bar_chart: Identify cell types and pathways affected by genetic risk loci.

Julia implementation of the next generation GSEA 🏔️

Grace, fastest, flexibility, simple PHP extension framework！优雅、极速、灵活、简单的PHP扩展框架！

Inferring gene co-expression networks from single cell gene expression data

Gene Co-expression Network analysis pipeline

(No maintenance) Detect gene fusion directly from raw fastq files

Gene Set Clustering based on Functional annotation

Digital Cell Sorter (DCS): single cell RNA-seq analysis toolkit. Documentation:

A Rust wrapper around the Entrez API. Helps you access the Entrez API using idiomatic Rust. It also provides tools to parse the XML results from Entrez.