Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

BWT construction and search

Sequence Indexing and Search

A string library

Incremental construction of FM-index for DNA sequences

The Modular Aligner and The Modular SV Caller

A small and fast FM-Index for Rust

A fast, AVX2 and ARM Neon accelerated FM index library

FM-index for Rust

Wavelet Matrix/Tree succinct data structure for full text search (based on shellinford C++ library)

Burrows-Wheeler Transform and FM-index in golang

Wavelet tree based on a fixed block boosting technique

Dynatrace FM-Index library

Algorihms about Suffix Array Construction, Suffix Tree, Longest Common Prefix, Burrows Wheeler Transform,

fast classification of metagenomic sequences with lightweight de Bruijin graph-based reference indexing

FM-index using slice view of blob

Evaluation tools for "A performant bridge between fixed-size and variable-size seeding"

Highly optimized genomic resources for GPUs

Computational Biology Assignments

No description provided.

Highly optimized Burrow-Wheeler Aligner specifically for Illumina ~150 bp short-read alignment.

A .NET library providing a high-performance Wavelet Matrix, Suffix Array, FM-Index, LCP Index and Burrows Wheeler Transform.

fm-index library for Python

《COMP620028 信息检索》课程作业：FM-index 实验

Basic seed-and-extend DNA sequence read aligner

No description provided.

bvSFM (bit-vector sampled FM-index) is a tool for sequence alignment.

Some of my leisure activities.

Web App: Generate suffix array, Burrows-Wheeler transform, and FM indices for input strings Translate DNA sequences into their corresponding protein sequences