An integrated visual environment for metabolic modeling methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!

A Python package for "classic" Constraint-Based Reconstruction and Analysis (COBRA) and the new COBRA with kinetics (COBRA-k). Link to documentation and tutorials:

Reaction Inclusion by Parsimony and Transcript Distribution

Constraint-based model vulnerabilities analysis - Python analysis tool http://contrabass.unizar.es

Genome-scale metabolic model of mouse brain (iMiceBrain) and case study of Tricyclic pyrone drug

This repository introduces the codes applied to the nasal microbial community of the latest available curated GEMs of D. pigrum and S. aureus.