Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data

Program for estimating dN/dS in overlapping genes (OLGs)

Pronunced /'baze/ - is a tool which allows to integrate non-ubiquitous genes in comparative genomics analyses for selection.

CRBHits - a reimplementation of the Conditional Reciprocal Best Hit algorithm in R.

MSA2dist calculates pairwise distances between all sequences of a DNAStringSet or a AAStringSet using a custom score matrix and conducts codon based analysis

EDEN: evolutionary dynamics within environments

A containerized R package for scalable dN/dS analysis and visualization with command-line interface support.

the user interface for EDEN - Evolutionary Dynamics within Environments